bismark 0.20.1 Map bisulfite treated sequence reads and analyze methylation
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away. Its main features are:
Bisulfite mapping and methylation calling in one single step
Supports single-end and paired-end read alignments
Supports ungapped and gapped alignments
Alignment seed length, number of mismatches etc are adjustable
Output discriminates between cytosine methylation in CpG, CHG and CHH context
- Website: https://www.bioinformatics.babraham.ac.uk/projects/bismark/
- License: GPL 3+
- Package source: bioinformatics.scm
- Patches: None
- Builds: x86_64-linux, i686-linux