pigx-scrnaseq 1.1.4 Analysis pipeline for single-cell RNA sequencing experiments
PiGX scRNAseq is an analysis pipeline for preprocessing and quality control for single cell RNA sequencing experiments. The inputs are read files from the sequencing experiment, and a configuration file which describes the experiment. It produces processed files for downstream analysis and interactive quality reports. The pipeline is designed to work with UMI based methods.
- Website: https://bioinformatics.mdc-berlin.de/pigx/
- License: GPL 3+
- Package source: bioinformatics.scm
- Patches: None
- Builds: x86_64-linux