r-fourcseq 1.21.0 Analysis of multiplexed 4C sequencing data
This package is an R package dedicated to the analysis of (multiplexed) 4C sequencing data. r-fourcseq
provides a pipeline to detect specific interactions between DNA elements and identify differential interactions between conditions. The statistical analysis in R starts with individual bam files for each sample as inputs. To obtain these files, the package contains a Python script to demultiplex libraries and trim off primer sequences. With a standard alignment software the required bam files can be then be generated.
- Website: https://bioconductor.org/packages/release/bioc/html/FourCSeq.html
- License: GPL 3+
- Package source: cran.scm
- Patches: None
- Builds: x86_64-linux, i686-linux