rsem 1.3.1 Estimate gene expression levels from RNA-Seq data
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.
- Website: http://deweylab.biostat.wisc.edu/rsem/
- License: GPL 3+
- Package source: bioinformatics.scm
- Patches: snippet
- Builds: x86_64-linux, i686-linux